Just a thought Go into your Fusion folder and load Fusion.exe and look at your control setup, if they are correct close Fusion and look for your Fusion.ini in the same folder and right hand click/properties and set the file to read-only, then load up GameEx and launch Fusion. If it doesnt work please upload your GameEx.ini and Log files. Read this for the location on these files Do you have other emu's setup and if you have do the controls work for them? 1. Are your controllers Wired/Wireless 2. Are you using Joy2Key, Xpadder etc... I had this problem with Windows 8 and my controls not working for any emulators in GameEx but they worked outside GameEx. I had to disable UAC on windows to make it work properly but lets hope it doesn't come to that.